BtaEX0011017 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94803007-94886700:-
Coord C1 exon
chr11:94886651-94886700
Coord A exon
chr11:94874633-94874752
Coord C2 exon
chr11:94803007-94803076
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTCTTTGGCGCAGCCT
3' ss Score
7.8
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGTTCTACAGACTCTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAG
Seq A exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCAAAGAGTTGCTTCTGTATCTTAAG
Seq C2 exon
CTATCTCCCCTGGTTCGAAGTATTTTATAAGCTACTTAACATCTTGGCAGATTACACGACAAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'11-24,'11-12,19-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(26.2=100)
A:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(4.9=22.0)
C2:
PF0214116=DENN=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTACAGACTCTGACCAAGT
R:
TCCTTTTGTCGTGTAATCTGCCA
Band lengths:
115-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development