GgaEX1019255 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9127087-9169614:-
Coord C1 exon
chr17:9169571-9169614
Coord A exon
chr17:9149284-9149403
Coord C2 exon
chr17:9127087-9127156
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTTATTTTCAGCCA
3' ss Score
8.65
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATCCTGAGGTGCGGAGGCAATTCCCAGAGGACTACAGTGACCAG
Seq A exon
CCATGCAGTTAGCCAAGTTGGACAGAACTTTACGTTTGTCCTTACAGACATTGACAGCAAACAGAGGTTTGGGTTCTGTCGCTTATCTTCTGGGGCCAAAAGCTGCTTCTGTATCTTAAG
Seq C2 exon
TTACCTACCATGGTTTGAAGTCTTTTATAAGCTGCTCAATGTCTTGGCAGATTATTCAGCAAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-2/19=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0345613=uDENN=PD(63.0=70.7),PF0214116=DENN=PU(4.9=22.0)
C2:
PF0214116=DENN=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGAGGTGCGGAGGC
R:
CTGTCCTTTTGCTGAATAATCTGCC
Band lengths:
114-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]