GgaEX1019255 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9840664-9866456:-
Coord C1 exon
chr17:9866407-9866456
Coord A exon
chr17:9862861-9862980
Coord C2 exon
chr17:9840664-9840733
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTTTATTTTCAGCCA
3' ss Score
8.65
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTTTACGTGGACAG
Seq A exon
CCATGCAGTTAGCCAAGTTGGACAGAACTTTACGTTTGTCCTTACAGACATTGACAGCAAACAGAGGTTTGGGTTCTGTCGCTTATCTTCTGGGGCCAAAAGCTGCTTCTGTATCTTAAG
Seq C2 exon
TTACCTACCATGGTTTGAAGTCTTTTATAAGCTGCTCAATGTCTTGGCAGATTATTCAGCAAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'6-17,'6-11,7-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF156511=Tox-SGS=FE(20.5=100),PF0345613=uDENN=FE(26.2=100)
A:
PF156511=Tox-SGS=PD(34.6=65.9),PF0345613=uDENN=PD(47.5=70.7)
C2:
PF0214116=DENN=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTACAGACTTTGACCAAGTT
R:
GTCCTTTTGCTGAATAATCTGCCA
Band lengths:
116-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]