HsaEX0019096 @ hg19
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:29324]
Coordinates
chr9:126438999-126531842:-
Coord C1 exon
chr9:126531793-126531842
Coord A exon
chr9:126519982-126520101
Coord C2 exon
chr9:126438999-126439068
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGCCTTTGCTGCAGCCT
3' ss Score
7.97
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAG
Seq A exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAG
Seq C2 exon
CTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX1-3/7=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(28.6=100),PF0306810=PAD=FE(21.9=100)
A:
PF0345613=uDENN=PD(52.7=70.7),PF0214116=DENN=PU(13.0=22.0)
C2:
PF0214116=DENN=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTCTACAGACTTTGACCAAG
R:
TTTTGTCGTGTAATCTGCCAGGA
Band lengths:
114-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)