RnoEX0027099 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22301387-22390148:-
Coord C1 exon
chr3:22390099-22390148
Coord A exon
chr3:22381123-22381242
Coord C2 exon
chr3:22301387-22301456
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTCTTCTCCACAGCCT
3' ss Score
10.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGTTCTACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAG
Seq A exon
CCTCTCAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAG
Seq C2 exon
CTACCTCCCCTGGTTTGAGGTATTTTATAAGCTCCTTAACATCTTGGCAGATTACACAACAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(26.2=100)
A:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(11.0=22.0)
C2:
PF0214116=DENN=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTACAGACTTTGACCAAGTT
R:
TGTTGTTTTGTTGTGTAATCTGCCA
Band lengths:
117-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]