BtaEX0011032 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19227006-19227783:+
Coord C1 exon
chr7:19227006-19227096
Coord A exon
chr7:19227197-19227237
Coord C2 exon
chr7:19227712-19227783
Length
41 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTCTTCTCTGCAGGGA
3' ss Score
12
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
TTCATCGAAGGCCGACTGGAGAAGCTGAACACGGGTGAAGGCTTCTCAGACCTCTTCGAACAGGAGATCACTTGTAGTGGGGCTTCCTCAG
Seq A exon
GGACACTCCGCTCCTACCAGCTTTGGGCAGACAACCTGAAG
Seq C2 exon
AAAGGTGGTGGTGCCCTTCTGCACTCCGTCAAGGCCAAGACCCAACCAGCTGTCAGGAACATGTACCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=12.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGAGAAGCTGAACACGG
R:
CTGACAGCTGGTTGGGTCTTG
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development