HsaEX0019124 @ hg38
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6470295-6471496:-
Coord C1 exon
chr19:6471406-6471496
Coord A exon
chr19:6471265-6471305
Coord C2 exon
chr19:6470295-6470366
Length
41 bp
Sequences
Splice sites
3' ss Seq
ACACTCTCTCCTTACCCCAGGGG
3' ss Score
9.01
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTCATCGAAGCCCGGCTGGAGAAGCTCAACAAGGGGGAGGGCTTCTCAGATCAATTCGAGCAGGAGATCACTGGCTGCGGGGCCTCCTCAG
Seq A exon
GGGCCCTTCGATCCTATCAGCTCTGGGCCGACAATCTAAAG
Seq C2 exon
AAAGGTGGTGGCGCCCTCCTGCACTCAGTCAAGGCCAAGACCCAACCAGCCGTCAAGAACATGTACCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744_MULTIEX2-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=12.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGCTCAACAAGGGG
R:
ATGTTCTTGACGGCTGGTTGG
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development