DreEX6034123 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55526238-55527040:-
Coord C1 exon
chr1:55526950-55527040
Coord A exon
chr1:55526829-55526869
Coord C2 exon
chr1:55526238-55526288
Length
41 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTGTGTTTCTCTCAGGTG
3' ss Score
10.94
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTATCGACGGGCGTCTGGAAATGCTGAACGAGGGCAAAGAGCCGAGCGACGTGTTTGAGGAAGAGCTGCTTCAGTGCGGAGCTTCATCAG
Seq A exon
GTGGAGCTAAACTGTGTCGGCAGTGGGTGGGAAATTTAAAG
Seq C2 exon
AAAGGCGGAGGAGCTCTGATTGTGACCTGGAAGTCTACAGCTAACAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(6.0=12.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCGACGGGCGTCTGGAAA
R:
AGCTGTAGACTTCCAGGTCACA
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]