HsaEX0019124 @ hg19
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:26225]
Coordinates
chr19:6470306-6471507:-
Coord C1 exon
chr19:6471417-6471507
Coord A exon
chr19:6471276-6471316
Coord C2 exon
chr19:6470306-6470377
Length
41 bp
Sequences
Splice sites
3' ss Seq
ACACTCTCTCCTTACCCCAGGGG
3' ss Score
9.01
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTCATCGAAGCCCGGCTGGAGAAGCTCAACAAGGGGGAGGGCTTCTCAGATCAATTCGAGCAGGAGATCACTGGCTGCGGGGCCTCCTCAG
Seq A exon
GGGCCCTTCGATCCTATCAGCTCTGGGCCGACAATCTAAAG
Seq C2 exon
AAAGGTGGTGGCGCCCTCCTGCACTCAGTCAAGGCCAAGACCCAACCAGCCGTCAAGAACATGTACCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.417
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=12.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGCTCAACAAGGGG
R:
ATGTTCTTGACGGCTGGTTGG
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)