MmuEX6078705 @ mm10
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57070113-57070623:-
Coord C1 exon
chr17:57070530-57070623
Coord A exon
chr17:57070408-57070448
Coord C2 exon
chr17:57070113-57070184
Length
41 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCCCTTCCTCCCAGGCA
3' ss Score
10.09
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TTCATCGAATCCCGACTGGAAAAACTCAATGCTGGGGAAGGCTTCTCAGACCAATTTGAGCAAGAGATCATTGCCTGCCGCGGAGCTTCCTCAG
Seq A exon
GCACCCTTCGGTCTTACCAGCTCTGGGTAGATAGTCTTAAG
Seq C2 exon
AAAGGTAGCGATGCCCTTCTGCATTCAATGAAGACAAAAACCCAACCAGCTGTCAGGAACATGTACCGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'23-42,'23-41,24-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.708
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=12.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCAATGCTGGGGAAGGC
R:
ATGTTCCTGACAGCTGGTTGG
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types