RnoEX0027133 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9977903-9978407:+
Coord C1 exon
chr9:9977903-9977996
Coord A exon
chr9:9978077-9978117
Coord C2 exon
chr9:9978336-9978407
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTCCCTTCCTCCCAGGCA
3' ss Score
9.54
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TTCATCGAATCCCGACTGGAAAAACTCAATGCTGGAGAAGGTTTCTCAGACCAATTTGAGCAAGAGATCATTGCCTGCTGCGGAGCTTCCTCAG
Seq A exon
GCACCCTTCGGTCCTATCAGCTCTGGGCAGATAGCCTTAAG
Seq C2 exon
AAAGGTAGTGATGCCCTCCTGCATTCTGTGAAAGCTAAAACCCGACCAGCGGTCAGGAACATGTACCGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'20-28,'20-27,21-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PD(5.9=12.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACTGGAAAAACTCAATGC
R:
CGCTGGTCGGGTTTTAGCTTT
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]