BtaEX0011367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147915651-147917505:+
Coord C1 exon
chr1:147915651-147915761
Coord A exon
chr1:147916930-147917053
Coord C2 exon
chr1:147917396-147917505
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTCTGTTTCTGCAGGAT
3' ss Score
12.12
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGGCGCTGGTGTTTCCGAATAGTGACCCAGTGATGTTCATGGTTGCGTTCTACGGGTGTCTCCTGGCTGAGCTGGTTCCTGTCCCCATCGAAGTGCCGCTCACCAGAAAG
Seq A exon
GATGCTGGCAGCCAGCAGGTCGGGTTTCTGCTGGGCAGCTGTGGCGTCTCCCTGGCCCTGACCACGGATGCTTGTCAGAAAGGCCTGCCCAAGGCTCAGACCGGAGAGGTGGTGACCTTCAAAG
Seq C2 exon
GCTGGCCCCCCCTCACCTGGCTGGTGATCGATGGGAAGCACCTGACCAAGCCCCCCAAGGACTGGAACCCGGCAGTGCAGGATGCGGGGCCCGGGACCGCCTACATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'9-17,'9-16,10-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGGTGTTTCCGAATAGT
R:
CTCGATGTAGGCGGTCCCG
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development