DreEX0026985 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:609820-611881:-
Coord C1 exon
chr9:611771-611881
Coord A exon
chr9:611290-611413
Coord C2 exon
chr9:609820-609929
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGATGTATGTGTGTGTGTAGGAT
3' ss Score
6.33
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTGCACTGGTGTTCCCCAATAATGACCCAGTGATGTTCATGGTCGCGTTTTACGGCTGTCTGCTGGCGGAGCTGGTGCCCGTGCCCATAGAGGTGCCGCTCACTCGAAAG
Seq A exon
GATGCGGGCGGGCAGCAGGTGGGCTTTCTGCTGGGCAGCTGTGGGGTCACTCTGGCTCTGACCACTGACGCCTGCCAGAAGGGTTTGCCCAAAGCACAGACTGGGGAGGTGGTCACTTTTAAAG
Seq C2 exon
GCTGGCCTCGGCTGCTGTGGTTTGTTACTGATGGAAAACATGTTGTAAAGCCTCCTAAAGACTGGCATCCACCAATACGAGACGCCAGCAACGAGATCGCATACATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.081
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCACTGGTGTTCCCCAAT
R:
TATGTATGCGATCTCGTTGCTGG
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]