GgaEX6041722 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6934895-6936284:-
Coord C1 exon
chr7:6936174-6936284
Coord A exon
chr7:6935303-6935426
Coord C2 exon
chr7:6934895-6935004
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATCATATGGTTTCTCTGTAGGAT
3' ss Score
10.09
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAGCTCTTGTATTTCCTAATAGTGATCCAGTTATGTTTATGGTGGCGTTCTATGGATGTCTCCTGGCAGAACTTATCCCTGTGCCAATAGAAGTTCCACTAACAAGAAAG
Seq A exon
GATGCTGGCAGCCAACAAATTGGCTTTCTTTTGGGCAGCTGTGGAGTAACGCTAGCTTTAACCACTGATGCTTGTCAGAAAGGCCTTCCTAAAGCTCAAACGGGTGAGGTGGTTACCTTCAAAG
Seq C2 exon
GTTGGCCTCGTCTCATTTGGTTTGTGATTGATGGGAAGCATCTGGCAAAACCAACTAAGGATTGGCATCCACAATTACGGGATGCCAGTGCTGAGATTGCTTATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'19-23,'19-21,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(10.4=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGTATTTCCTAATAGTGATCC
R:
CTCAATATAAGCAATCTCAGCACTGG
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]