MmuEX6049153 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76298253-76300013:-
Coord C1 exon
chr10:76299903-76300013
Coord A exon
chr10:76298670-76298793
Coord C2 exon
chr10:76298253-76298362
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATTGCTTTGTCTTCTGCAGGAT
3' ss Score
11.95
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCACTCGTGTTTCCAAACAGTGACCCTGTCATGTTCATGGTGGCGTTCTACGGGTGTCTCCTGGCGGAGCTGGTCCCTGTCCCTATAGAAGTACCACTAACGAGAAAG
Seq A exon
GATGCAGGCAGCCAGCAGGTTGGGTTTCTCCTGGGCAGCTGTGGGGTGACCCTGGCCCTGACCACAGATGCTTGTCAGAAGGGTCTGCCCAAGGCACCGACAGGCGAGGTGGCCACTTTCAAAG
Seq C2 exon
GTTGGCCCCCCCTCGCCTGGCTGGTGATTGATGGGAAGCATCTGACGAGGCCTCCAAAGGACTGGTACCCGCTGGCCCAGGACACAGGGTCCAGGACTGCCTACATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'15-14,'15-13,17-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(37.1=100)
A:
PF0050123=AMP-binding=FE(24.7=100)
C2:
PF0050123=AMP-binding=PD(16.3=73.0)
Main Skipping Isoform:
ENSMUST00000036033fB8794
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACTCGTGTTTCCAAACA
R:
CAATGTAGGCAGTCCTGGACC
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types