HsaEX6006746 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47952040-47954026:+
Coord C1 exon
chr21:47952040-47952150
Coord A exon
chr21:47953437-47953560
Coord C2 exon
chr21:47953917-47954026
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGTCACTCTGCTTTCTGCAGGAT
3' ss Score
7.96
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCGCTCGTGTTTCCGAATAGTGACCCTGTGATGTTCATGGTTGCATTTTATGGGTGTCTCCTGGCAGAGCTGGTTCCTGTCCCCATAGAAGTGCCATTAACAAGAAAG
Seq A exon
GATGCAGGCAGCCAGCAGGTTGGGTTTCTGCTGGGCAGCTGTGGAGTCTTCTTGGCCCTGACCACAGACGCTTGTCAGAAAGGCCTCCCCAAGGCACAGACAGGAGAGGTGGCAGCTTTCAAAG
Seq C2 exon
GTTGGCCCCCGCTCTCCTGGCTAGTGATTGATGGGAAGCATCTAGCCAAGCCCCCAAAGGACTGGCACCCTCTGGCCCAGGACACAGGGACTGGGACTGCCTACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.108
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCGTGTTTCCGAATAGT
R:
CTCAATGTAGGCAGTCCCAGT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)