RnoEX6062362 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13090389-13092136:+
Coord C1 exon
chr20:13090389-13090499
Coord A exon
chr20:13091629-13091752
Coord C2 exon
chr20:13092027-13092136
Length
124 bp
Sequences
Splice sites
3' ss Seq
CATCGCTTTGTCTTCTGCAGGAT
3' ss Score
12.09
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCACTCGTGTTTCCAAATAGTGACCCTGTAATGTTTATGGTTGCGTTTTACGGGTGTCTCCTGGCGGAGCTGGTCCCTGTCCCTATAGAAGTACCATTAACGAGAAAG
Seq A exon
GATGCAGGCAGCCAGCATGTTGGCTTTCTCCTGGGCAGCTGCGGGGTGACCCTGGCCCTGACCACAGATGCTTGTCAGAAGGGCCTGCCCAAGGCGCCGACAGGAGAGGTGGCAACTTTCAAAG
Seq C2 exon
GTTGGCCCCCCCTGGCCTGGCTGGTGATTGATGGGAAGCATCTGACCAAGCCTCCGAAGGACTGGTACCCGCTGGCCCAGGACACAGGGTCCAGGACCGCCTACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCACTCGTGTTTCCAAAT
R:
CTCAATGTAGGCGGTCCTGGA
Band lengths:
221-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]