BtaEX0011580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54385718-54388430:+
Coord C1 exon
chr19:54385718-54385953
Coord A exon
chr19:54386588-54386710
Coord C2 exon
chr19:54388226-54388430
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCTGATGCTGTGCCCACAGCTA
3' ss Score
7.28
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTCCCGATCCCGATCACGAAGGGTCTGGACCCCTTGACCCTGCTGACCGACGACGCAGATGTGGCCACCTGGAACAACCAGGGGCTCCCCAGCGACCGCATGTCCACGGAGAACGCCACCATCCTGTGCAACACGGAGCGCTGGCCCCTCATCGTGGATGCCCAGCTGCAGGGCATCAAGTGGATCAAAAACAAATACGGCAGCGAGCTGAAGGCCATCCGCCTGGGACAGAAGAG
Seq A exon
CTATCTGGACATCATCGAGCAGGCCATCTCGGAAGGGGACACCTTGCTCATTGAGAACATTGGCGAGACCATCGACCCGGTTCTGGACCCCCTGCTGGGCAGGAACACGATCAAAAAGGGAAA
Seq C2 exon
GTACATTAAGATCGGCGACAAGGAGGTGGAGTACCACCCCAACTTCCGTCTGATCTTGCACACCAAGTACTTCAACCCCCACTACAAGCCCGAGATGCAGGCCCAGTGCACCCTGATCAACTTCCTGGTCACCAGGGACGGGCTGGAGGACCAGCTCTTGGCCGCCGTGGTGGCGAAGGAGCGCCCAGACCTGGAGCAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCGATCACGAAGGGTCT
R:
ACCTCCTTGTCGCCGATCTTA
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development