GgaEX1020179 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10090831-10091860:+
Coord C1 exon
chr18:10090831-10091066
Coord A exon
chr18:10091152-10091274
Coord C2 exon
chr18:10091656-10091860
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCTGGCCGCTCACAGCTA
3' ss Score
7.46
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGCCCATTCCCACCACGCCAGAGCTGGACCCCCTCAGCCTCCTCACCGACGCCGCCGACGTGGCCACGTGGAGCAACCAGGGGCTGCCCAGCGACCGCACCTCCACCGAGAACGCTACCATCCTCTGCAACACGCAGCGGTGGCCACTGGTGGTGGACGCTCAGCTGCAGGGCATCAAGTGGATCAGGAACAAATACGGGGAGCGGCTGAAGGCCATCCGGCTGGGCCAGAGGAG
Seq A exon
CTACCTGGACACCATTGAGCAGGCGGTTTCCGAAGGGCACACGCTGCTGATTGAGGACATTGGCGAGACAGTGGAGCCGGTGCTGGACCACCTGCTGGGCAGGAACACCGTCAAGAAGGGCAG
Seq C2 exon
ATACATTAAGATAGGAGACAAAGAAGTGGAGTACCATCCGCAGTTCCGCCTGATCCTGCACACCAAGTACTTCAACCCACACTACAAGCCTGAGATGCAGGCGCAGTGCACGCTGATCAACTTCTTGGTGACGCGGGAGGGCTTGGAGGACCAACTGCTGGCCGCTGTGGTGGCCAAGGAGCGCCCCGACCTGGAGGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCATCCTCTGCAACACGC
R:
CCGCGTCACCAAGAAGTTGAT
Band lengths:
257-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]