MmuEX0014978 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118043022-118046254:-
Coord C1 exon
chr11:118046019-118046254
Coord A exon
chr11:118045222-118045344
Coord C2 exon
chr11:118043022-118043226
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCGTTCTGTGCCCAGCTA
3' ss Score
8.93
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCCGATCCCCATCACAGAGGGCCTGGATCCCTTGACTCTGCTGACTGATGACGCAGACGTGGCCACCTGGAACAACCAGGGTCTGCCCAGCGACCGCATGTCCACAGAGAATGCCACCATCCTGTGCAACACAGAGCGCTGGCCGCTGATTGTGGATGCCCAGCTCCAAGGCATCAAGTGGATCAAAAACAAATACGGCAGTGATCTGCAGGCCATTCGCCTAGGGCAGAAGAG
Seq A exon
CTACCTAGACATCATCGAGCAGGCCATCTCAGCAGGTGACACCTTACTCATCGAGAACATTGGTGAAACTGTAGACCCCGTGCTCGACCCACTGCTGGGCAGGAACACCATCAAAAAGGGGAG
Seq C2 exon
GTTCATTAAGATCGGCGACAAGGAGGTGGAGTACCACCCCAGTTTCCGCCTGATCCTACACACCAAGTACTTCAACCCGCACTACAAGCCCGAGATGCAGGCCCAGTGCACGCTCATCAACTTCCTGGTCACCAGAGACGGGCTGGAGGACCAGCTCCTGGCCGCTGTGGTGGCCAAAGAGCGTCCGGATCTGGAACAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'80-85,'80-83,81-85
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAGAATGCCACCATCC
R:
GGAAGTTGATGAGCGTGCACT
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types