HsaEX0020174 @ hg19
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76447551-76450787:-
Coord C1 exon
chr17:76450552-76450787
Coord A exon
chr17:76449425-76449547
Coord C2 exon
chr17:76447551-76447755
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTCCGTGTTGTGCCCGCAGCTA
3' ss Score
10.77
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTCCCCATCCCGATCACGAATGGCCTGGATCCCTTGAGCCTGCTGACAGATGACGCGGACGTGGCCACCTGGAACAACCAGGGCCTCCCCAGCGACCGCATGTCCACCGAGAATGCCACCATCCTGGGCAACACCGAGCGGTGGCCGCTGATCGTGGACGCCCAGCTCCAAGGAATCAAGTGGATCAAAAACAAATACAGGAGTGAACTGAAAGCCATCCGCCTGGGACAGAAGAG
Seq A exon
CTACCTGGATGTCATCGAGCAGGCCATCTCGGAAGGGGACACCTTGCTCATTGAGAACATCGGCGAAACCGTGGACCCCGTGCTGGACCCTCTACTGGGCAGGAACACGATTAAAAAGGGAAA
Seq C2 exon
GTACATTAAGATCGGTGACAAGGAGGTGGAGTACCACCCCAAGTTCCGCCTGATCCTACACACCAAGTACTTCAACCCACACTACAAGCCAGAGATGCAGGCTCAGTGCACCCTCATCAACTTCCTGGTCACCAGGGATGGACTCGAGGACCAACTCTTGGCCGCTGTGGTGGCCAAAGAGCGCCCAGATCTGGAACAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'69-71,'69-70,70-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PU(28.5=82.3)
A:
PF127812=AAA_9=FE(18.0=100)
C2:
PF127812=AAA_9=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACGAATGGCCTGGATCC
R:
TACTCCACCTCCTTGTCACCG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)