Special

MmuEX0014978 @ mm9

Exon Skipping

Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117904336-117907568:-
Coord C1 exon
chr11:117907333-117907568
Coord A exon
chr11:117906536-117906658
Coord C2 exon
chr11:117904336-117904540
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCGTTCTGTGCCCAGCTA
3' ss Score
8.93
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCCGATCCCCATCACAGAGGGCCTGGATCCCTTGACTCTGCTGACTGATGACGCAGACGTGGCCACCTGGAACAACCAGGGTCTGCCCAGCGACCGCATGTCCACAGAGAATGCCACCATCCTGTGCAACACAGAGCGCTGGCCGCTGATTGTGGATGCCCAGCTCCAAGGCATCAAGTGGATCAAAAACAAATACGGCAGTGATCTGCAGGCCATTCGCCTAGGGCAGAAGAG
Seq A exon
CTACCTAGACATCATCGAGCAGGCCATCTCAGCAGGTGACACCTTACTCATCGAGAACATTGGTGAAACTGTAGACCCCGTGCTCGACCCACTGCTGGGCAGGAACACCATCAAAAAGGGGAG
Seq C2 exon
GTTCATTAAGATCGGCGACAAGGAGGTGGAGTACCACCCCAGTTTCCGCCTGATCCTACACACCAAGTACTTCAACCCGCACTACAAGCCCGAGATGCAGGCCCAGTGCACGCTCATCAACTTCCTGGTCACCAGAGACGGGCTGGAGGACCAGCTCCTGGCCGCTGTGGTGGCCAAAGAGCGTCCGGATCTGGAACAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.025 A=0.000 C2=0.014
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127812=AAA_9=PU(28.5=82.3)

							
A:
PF127812=AAA_9=FE(18.0=100)

							
C2:
PF127812=AAA_9=FE(29.8=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101915





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000047129, ENSMUSP00000081864, ENSMUSP00000120542
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:78453343-78453465 
HIGH PSI
HsaEX0020174
(DNAH17)
Human
(hg19)
chr17:76449425-76449547 
HIGH PSI
HsaEX0020174
(DNAH17)
Rat
(rn6)
chr10:107055451-107055573 
HIGH PSI
RnoEX0028487
(Dnah17)
Cow
(bosTau6)
chr19:54386588-54386710 
ALTERNATIVE
BtaEX0011580
(DNAH17)
Chicken
(galGal4)
chr18:10091152-10091274 
HIGH PSI
GgaEX1020179
(DNAH17)
Chicken
(galGal3)
chr18:9763102-9763224 
Zebrafish
(danRer10)
chr6:10374877-10374999 
DreEX6020696
(dnah9l)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCACAGAGAATGCCACCATCC

				
R: 
GGAAGTTGATGAGCGTGCACT

				
Band lengths: 
258-381

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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