BtaEX0011626 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12862510-12867245:+
Coord C1 exon
chr23:12862510-12862666
Coord A exon
chr23:12866820-12866972
Coord C2 exon
chr23:12867056-12867245
Length
153 bp
Sequences
Splice sites
3' ss Seq
TATTGTATGCTTTGTGTTAGGTG
3' ss Score
7.19
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TTACCAGAGTAACACCGCTTCTGCTGTGCTTGAAACAATTACCAACATTCAGCCCAAAGAGAGTGGAGGCGGCGTGGGAGAGACCCGGGAAGCCATTGTTTACAGGTTATCTGAAGACATGCTGAGCAAGCTGCCTCCTGATTACGTTCCCCATGAG
Seq A exon
GTGAAAGCTCGTTTGATAAAGATGGGGCATCTTAATTCAATGAACATATTTCTCAGACAAGAAATTGACAGAATGCAAAAAGTCATTTCAATACTTCGCAGTAGCCTGAATGATCTAAAATTGGCCATTGAAGGCACGATCATTATGAGTGAG
Seq C2 exon
AACTTGAGAGATGCTCTGGACAACATGTATGATGCCCGTATACCCCAAATCTGGAAAAGAGTGTCCTGGGACTCCTCCACACTGGGCTTCTGGTTTACTGAACTTTTGGAAAGAAACGCTCAGTTTTCTACCTGGATATTTGAAGGGAGGCCCAATGTGTTCTGGATGACTGGTTTCTTCAATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGGGAAGCCATTGTTTAC
R:
CATCCAGAACACATTGGGCCT
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development