RnoEX0028603 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9537678-9542276:+
Coord C1 exon
chr20:9537678-9537834
Coord A exon
chr20:9541137-9541289
Coord C2 exon
chr20:9542087-9542276
Length
153 bp
Sequences
Splice sites
3' ss Seq
CACGCTCCCCCTTGTTGTAGGTG
3' ss Score
11
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTATCAGAGTAACACGGCTTCCGATGTTCTCGAAACCATCACTAACATCCAGCCGAAAGAGAGCGGCGGCGGCATGGGCGAGACTCGAGAGGCCATTGTCTACAGGCTGTCTGAGGACATGCTCAGCAAGCTGCCCCCTAACTATGTGGCTCATGAG
Seq A exon
GTGAAAGCCCGTTTGATGAAGATGGGACACCTTAATTCCATGAACATATTCCTTAGACAGGAGATCGACAGGATGCAGAGGGTCATCTCGCTCCTCCGGAATAGTCTGAATGACCTGAAGCTGGCTATCGAAGGAACAATCATCATGAGTGAG
Seq C2 exon
AACTTGAGAGATGCGTTGGACAACATGTATGATGCTCGCATACCTCAGCTCTGGAAGAGAGTGTCCTGGGACTCCTCCACCCTGGGCTTCTGGTTCACCGAACTTCTGGAAAGGAACGCTCAGTTCTCAACGTGGATATTCGAGGGAAGGCCTAACGTATTCTGGATGACCGGGTTCTTTAACCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'134-144,'134-142,136-144
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATTGTCTACAGGCTGTC
R:
ACCCGGTCATCCAGAATACGT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]