GgaEX1020239 @ galGal4
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr3:28742438-28743823:-
Coord C1 exon
chr3:28743667-28743823
Coord A exon
chr3:28742721-28742873
Coord C2 exon
chr3:28742438-28742627
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTGGCCATCTGTATTTTAGGTA
3' ss Score
10.81
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
ATACCAAAGTAACACAGCAGCTGATGTTCTAGATACTATTACCAATATTCAGCCTAAAGAAAGTGGTGCAGGACCTGGAGAAACTCGTGAAGCAATTGTTTATCGTTTAGCTGAAGATATGCTAGAGAAACTTCCTCCGGATTATATACCTCATGAG
Seq A exon
GTAAAAGCTCGTTTAATTAAAATGGGACAACTCAACTCTATGAATATTTTTCTTCGACAAGAAATTGACAGAATGCAAAAAGTTATCACAGTAGTCCGCAACAGTTTGAATGATCTTAAATTAGCCATAGAAGGGACTATTATTATGAGCGAG
Seq C2 exon
AATTTGAGAGATGCACTGGATAATATGTATGATGCTCGAATTCCTCAAGTATGGAAAAGAGTATCTTGGGATTCTTCAACACTGGGCTTCTGGTTTACTGAATTTCTGGAAAGAAATACTCAATTCTCTACTTGGATATTTGAAGGAAGACCAAATGTGTTTTGGATGACTGGATTCTTTAATCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'72-73,'72-72,73-73
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGTAACACAGCAGCTGA
R:
GCCCAGTGTTGAAGAATCCCA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]