MmuEX0015102 @ mm10
Exon Skipping
Gene
ENSMUSG00000033826 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30851628-30856094:+
Coord C1 exon
chr17:30851628-30851784
Coord A exon
chr17:30854801-30854953
Coord C2 exon
chr17:30855905-30856094
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGAGCGCTACTTTGTTTCAGGTG
3' ss Score
6.34
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTATCAGAGTAACACAGCTTCCGACGTTCTTGAAACCATCACCAACATTCAACCGAAAGAGAGCGGTGGTGGTGTGGGCGAGACGCGCGAGGCCATTGTCTACAGGCTGTCTGAGGACATGCTCAGCAAGCTGCCCCCTAACTATGTGCCTCATGAG
Seq A exon
GTGAAAGCTCGCTTGATGAAGATGGGGCACCTGAACTCAATGAACATATTTCTTAGACAGGAAATTGACAGGATGCAGAAAGTCATCTCAATCCTCCGCAGCAGCCTGAGTGACCTAAAACTGGCTATCGAAGGGACGATCATCATGAGTGAG
Seq C2 exon
AACTTGAGAGATGCGTTGGATAACATGTATGATGCTCGTATACCTCAGCTTTGGAAGAGGGTGTCCTGGGACTCCTCCACCCTGGGCTTCTGGTTCACCGAACTTCTGGAAAGGAACGCCCAGTTCTCGACATGGATATTTGAGGGGAGGCCTAACGTGTTCTGGATGACCGGGTTCTTTAACCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'138-155,'138-152,140-155
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATTGTCTACAGGCTGTC
R:
GAACCCGGTCATCCAGAACAC
Band lengths:
244-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types