HsaEX6047005 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38976590-38980413:+
Coord C1 exon
chr6:38976590-38976746
Coord A exon
chr6:38979991-38980143
Coord C2 exon
chr6:38980224-38980413
Length
153 bp
Sequences
Splice sites
3' ss Seq
CATTGTTTACTTTGTTTTAGGTG
3' ss Score
11.02
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTATCAGAGTAACACTGCTTCTGCTGTTCTTGAAACAATTACCAACATTCAACCCAAAGAGAGTGGAGGTGGTGTGGGAGAGACCCGGGAGGCTATTGTTTATAGATTATCTGAAGATATGCTGAGTAAACTCCCTCCTGATTACATTCCTCATGAG
Seq A exon
GTGAAATCTCGTTTGATAAAGATGGGCCATCTTAATTCAATGAACATATTTCTTAGACAAGAAATTGACAGAATGCAAAGAGTCATTTCAATACTCCGCAGTAGCCTGAGTGATCTAAAATTGGCCATTGAAGGAACAATCATTATGAGTGAG
Seq C2 exon
AATCTGAGAGATGCTCTGGACAACATGTATGATGCTCGTATACCTCAGCTCTGGAAAAGAGTGTCTTGGGATTCGTCCACACTGGGCTTCTGGTTCACTGAACTTTTGGAAAGAAATGCTCAGTTTTCTACGTGGATATTTGAAGGGAGGCCTAATGTGTTTTGGATGACTGGTTTCTTTAATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'92-94,'92-93,93-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.5=100)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGTGGAGGTGGTGTGG
R:
GGCCTCCCTTCAAATATCCACG
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)