BtaEX0014937 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98498179-98500047:+
Coord C1 exon
chr11:98498179-98498345
Coord A exon
chr11:98499775-98499903
Coord C2 exon
chr11:98499994-98500047
Length
129 bp
Sequences
Splice sites
3' ss Seq
TACCTGGGGCTCACTGCCAGGAT
3' ss Score
3.45
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGGTCCGGGCCTAGCGTGCAGCTGCCTGGCCCTCTACTATGTCTCGGGCACGCTGCCACGCTCTCTTCCTGGCAGCGGTTTCTCCGCGTGGTGCAACAACCAGGGTCGCAGTGCGGCGAGGGTTGAGCGCGTGGCCTGTGCTGCAGGAGCCAGACATGGAGTATCAG
Seq A exon
GATGCCGTGCGTACACTCAACACCCTGCAGACCAATGCTAACTACTTGGAGATGGTGAAGCGTAAGCGGGGTGACCCCCAGACACAGCTGGAAGCCATGAAGCTGTACTTGGCACGGAGTGGGCTGCAG
Seq C2 exon
GTGGAGGACTTGGACCAGCTGAACATTATCCACATCACTGGAACCAAGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994-'0-4,'0-2,1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082457=Mur_ligase_M=PU(2.9=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCTGGCCCTCTACTAT
R:
CTTCCCCTTGGTTCCAGTGATG
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development