DreEX0033397 @ danRer10
Exon Skipping
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6008797-6014365:+
Coord C1 exon
chr21:6008797-6009373
Coord A exon
chr21:6012106-6012234
Coord C2 exon
chr21:6014312-6014365
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCATTATGAATGTGTTTCAGGAT
3' ss Score
9.26
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AACATGCACCTCTGCAGCGCCACATGTTTCTGCGAGATTATTGACACGCAGCCTGGTTAAAACAGGATAAACATCTGCTGTAGCTTGACTCGACAGCGAACTGGAATTGTAACGTTGATTCAACTATTCGCTCTGCAGCCTATCTTGACTTTGCATCTTCCGCGTCACAAAACCATCATTTATTTCTGCTCTACTTCACGCAAACTGCTGTCATCCACACTGGCGATGATAAACAACAAACAGTATAGTGAAATCTGTATGGCGAGCAGGAAGGAGGCGTGGCATGACGCGAGAGTTCACTATTGACAGGAAAACTCCCCAAATTTGGTGCTGCTTCCTGCACTCTCCGGGCCACCATGCTGCTGTTCCGCGTGCTGGAGAATTTACGCGCGTGGACTGAAGTCTCGGCGCGTAACCGACACTGGACCAGCATTGTCGGGCTGTCAGTGAGATTTTCCAGCACTAAAGCTGCTCCGCGGTACCGAAGAATGGACTATCAG
Seq A exon
GATGCGGTTTGCACCCTCAACACCCTCCAGACGAATGCCAGCGCTCTGGAGCAGGTGAAGCGAGAGCGGGGACATCCTCAGCTCCAGCTGCAGGCCATGAGGGGCTTTCTTCAGCGAGCAGGACTCAAG
Seq C2 exon
GTAGAAGAACTGGATCGTCTTAATATTATTCATGTAACTGGAACAAAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082457=Mur_ligase_M=PU(2.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAGGAAAACTCCCCAAA
R:
CTTTCCTTTTGTTCCAGTTACATGA
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]