MmuEX0019595 @ mm9
Exon Skipping
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32547971-32549705:-
Coord C1 exon
chr2:32549509-32549705
Coord A exon
chr2:32548113-32548241
Coord C2 exon
chr2:32547971-32548024
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTGGGACTATGGTTGCTAGGAT
3' ss Score
1.83
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGGCGGGGCGAAGCGGGGCGGCTCCGGCCCAGGCCTAGCTTGCGGTGGCATTAAGACTATGTCGTGGGCGCGGAGCCGACTGTGCTCGACTCTGTCCCTGGCAGCTGTTTCTGCGCGTGGTGCAACGACGGAGGGCGCGGCGCGGCGGGGGATGAGCGCGTGGCCAGCGCCACAGGAGCCGGGCATGGAGTATCAG
Seq A exon
GATGCTGTGCGCACGCTCAACACCCTGCAAACCAATGCCAGCTACCTGGAGCAGGTAAAGCGCCAACGGAGTGACCCCCAGGCGCAGCTGGAGGCTATGGAGATGTACCTGGCACGGAGTGGACTGCAG
Seq C2 exon
GTGGAGGACTTGAACCGGCTAAACATTATTCATGTCACTGGGACCAAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-'2-6,'2-5,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.116 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082457=Mur_ligase_M=PU(2.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTAGCTTGCGGTG
R:
TCCCTTTGGTCCCAGTGACAT
Band lengths:
219-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: