MmuEX0019595 @ mm10
Exon Skipping
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32692451-32703961:-
Coord C1 exon
chr2:32703825-32703961
Coord A exon
chr2:32692593-32692721
Coord C2 exon
chr2:32692451-32692504
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTGGGACTATGGTTGCTAGGAT
3' ss Score
1.83
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGCCAAGTGATGATGAAAAGCACCAGGTGCCTGCCTATGTCCTGGCCTGTGGCTGAGAAGTTCTGGTGGGAAGCAGCCATGGAGTGGAAGGACCCATCAGGGAGTGCTTACGAAGCTAAGACTGCCTCCTTTCAG
Seq A exon
GATGCTGTGCGCACGCTCAACACCCTGCAAACCAATGCCAGCTACCTGGAGCAGGTAAAGCGCCAACGGAGTGACCCCCAGGCGCAGCTGGAGGCTATGGAGATGTACCTGGCACGGAGTGGACTGCAG
Seq C2 exon
GTGGAGGACTTGAACCGGCTAAACATTATTCATGTCACTGGGACCAAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082457=Mur_ligase_M=PU(10.9=33.3)
Main Skipping Isoform:
ENSMUST00000127812fB10213
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGTGATGATGAAAAGCACC
R:
TCCCTTTGGTCCCAGTGACAT
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types