HsaEX6063135 @ hg38
Exon Skipping
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr9:127802858-127804552:+
Coord C1 exon
chr9:127802858-127803062
Coord A exon
chr9:127804285-127804413
Coord C2 exon
chr9:127804499-127804552
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGGGCACTGTGGTTGCCAGGAT
3' ss Score
3.85
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATTGGCTGGGGGCGGGGCGGGGCGTCTCCCGCCCGGGCCTAGAGCGCTGCCGGGGGCGCCGGGACTATGTCGCGGGCGCGGAGCCACCTGCGCGCCGCTCTATTCCTGGCAGCGGCGTCTGCGCGCGGCATAACGACCCAGGTCGCGGCGCGGCGGGGCTTGAGCGCGTGGCCGGTGCCGCAGGAGCCGAGCATGGAGTACCAG
Seq A exon
GATGCCGTGCGCATGCTCAATACCCTGCAGACCAATGCCGGCTACCTGGAGCAGGTGAAGCGCCAGCGGGGTGACCCTCAGACACAGTTGGAAGCCATGGAACTGTACCTGGCACGGAGTGGGCTGCAG
Seq C2 exon
GTGGAGGACTTGGACCGGCTGAACATCATCCACGTCACTGGGACGAAGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-'1-17,'1-13,5-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF082457=Mur_ligase_M=PU(2.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCCGGGACTATGTC
R:
CTTCCCCTTCGTCCCAGTGA
Band lengths:
205-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains