BtaEX0015289 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005562 | GALNT13
Description
Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) (GALNT13), mRNA. [Source:RefSeq mRNA;Acc:NM_001076886]
Coordinates
chr2:41791846-41840146:-
Coord C1 exon
chr2:41840048-41840146
Coord A exon
chr2:41805965-41806099
Coord C2 exon
chr2:41791846-41791986
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTGCCTTTTATATTTGCAGGTA
3' ss Score
9.59
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATAAGAAATGTTGAAACAAATCAATGTTTAGACAACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATATTCAACTGTCATGGTATGGGAGGAAATCAG
Seq A exon
GTATTTTCTTATACTGCTGACAAAGAAATCCGAACCGATGACTTGTGCTTAGATGTTTCTAGACTCAATGGACCTGTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATGGGAGTATGATGCTGAG
Seq C2 exon
AGACTCACCTTGAGACATGTTAACAGTAATCAATGTCTAGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACCATGCAGGACTGTAGTGGAACCAGATCTCAACAATGGCTGCTAAGGAACATGACTCTGGGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005562_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.304
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGACAACATGGGCCGCAA
R:
GCCCCCAGAGTCATGTTCCTT
Band lengths:
210-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development