GgaEX0018938 @ galGal4
Exon Skipping
Gene
ENSGALG00000012536 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr7:35214872-35224558:+
Coord C1 exon
chr7:35214872-35214970
Coord A exon
chr7:35218398-35218532
Coord C2 exon
chr7:35224418-35224558
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAGGCACTTTCTCTTGGCAGGTG
3' ss Score
8.72
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATCAGGAACGTTGACACCAACCAGTGTTTGGACAACATGGGCCGCAAGGAAAACGAGAAAGTGGGCATCTTCAACTGCCACGGCATGGGAGGGAACCAG
Seq A exon
GTGTTTTCCTACACGGCAGACAAGGAGATCCGCACGGATGATCTGTGCCTGGACGTGTCGCGGCTGAACGGCCCGGTGACCATGCTCAAGTGCCACCACATGCGGGGAAACCAGCTCTGGGAGTACGATGCTGAG
Seq C2 exon
AAGCTCACCCTGAGGCACGTCAACAGCAACCAGTGCCTGGACGGGCCGTCGGAGGAGGACAAGCTGGTCCCCAGCATGAAGGAGTGTGCGGGCGGCCGGTCCCAGCAGTGGCTGCTGCGCAACATGACGCTGGGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012536-'24-22,'24-19,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Skipping Isoform:
ENSGALT00000020475fB7781
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGAACGTTGACACCAAC
R:
CCCCCAGCGTCATGTTGC
Band lengths:
235-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]