DreEX6034933 @ danRer10
Exon Skipping
Gene
ENSDARG00000099227 | galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
Coordinates
chr9:4598148-4599889:-
Coord C1 exon
chr9:4599791-4599889
Coord A exon
chr9:4599262-4599396
Coord C2 exon
chr9:4598148-4598177
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTTTTGCATCTGCTTGCAGGTA
3' ss Score
9.97
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCAGGAATGTTGAGACCAATCAGTGTGTTGATAACATGGGCCGTAAGGAGAATGAAAAGGTTGGCTTCTTCAACTGTCATGGAATGGGAGGAAACCAG
Seq A exon
GTATTTTCATACACTGCTGACAAAGAAATCCGTACGGATGACCTGTGTCTGGATGCATCACGACTGAATGGACCTGTTGTTATGCTGAAGTGCCACCACATGAAGGGAAACCAGATGTTTGAATATGATGCAGAG
Seq C2 exon
TATGTTGGCAAATGGGAGTATGACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099227-'10-13,'10-12,12-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(24.6=100)
A:
PF0065217=Ricin_B_lectin=FE(33.8=100)
C2:
PF0065217=Ricin_B_lectin=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAATGTTGAGACCAATCAGTG
R:
AGTCATACTCCCATTTGCCAACA
Band lengths:
123-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]