MmuEX6000588 @ mm9

Exon Skipping

Gene

ENSMUSG00000000420 | Galnt1

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]

Coordinates

chr18:24438445-24441692:+

Coord C1 exon

chr18:24438445-24438543

Coord A exon

chr18:24440603-24440737

Coord C2 exon

chr18:24441040-24441692

Length

135 bp

Sequences

Splice sites

3' ss Seq

GGTTCATGTTCGCTTTTCAGGTT

3' ss Score

10

5' ss Seq

GTGGTGAGT

5' ss Score

8.95

Exon sequences

Seq C1 exon

ATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGGTTGGAATCTTTAATTGTCATGGTATGGGAGGTAATCAG

Seq A exon

GTTTTCTCCTACACTGCCAACAAAGAAATTAGAACAGACGACCTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTCACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGAGTATGACCCAGTG

Seq C2 exon

AGCAGTTTTCCTGAACGCTGAAGGTCAGTGTGTGTCAGCTCAGCTTCAGTATCACCATGTACCCATCGTGGGTATTTACGCCCGGATGCTGACAGGAAGGCCTCGCGAGATGCTACAGTCTAAGATGGAACCACATTTTACACATTCTAATTTTAGGATAGGAAAGTATACTAATACAATAAGTAAGAGAATTTTAAAAGTGTTGCTTAGCCCTTGTTGAACAAAATTCCATTATTAGCTTATTCTTTAAGTACTCCAGTTAATAAAGGCTTGATTGTACTTCAAGGACTCTGACTTTTCCAAAGATTAACAACTAGTTATTACTGTTACATCAAAAGCAAAGCTTCCAAGCTTCCCACGCTTGTCCTTAAAGCATGTTTACATCATAGATAACTCCTTATGCCTGACAGCACGTCTGTGGCTAGGCCTCGTATAGTAAGCCTTGACTCAGAAAAGGAAAGAACCTAAGTAAAGGAAATGTGTGCTTTTAGAAATTGGAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000000420-'18-18,'18-17,19-18=AN

Average complexity

A_C3

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features