RnoEX0037558 @ rn6
Exon Skipping
Gene
ENSRNOG00000016207 | Galnt1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RGD Symbol;Acc:620358]
Coordinates
chr18:16180831-16185496:+
Coord C1 exon
chr18:16180831-16180929
Coord A exon
chr18:16181759-16181893
Coord C2 exon
chr18:16185153-16185496
Length
135 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTGTTTGTTTTTCAGGTT
3' ss Score
11.21
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATACGAAATGTGGAAACAAATCAATGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGGTTGGAATTTTTAATTGTCATGGTATGGGAGGCAATCAG
Seq A exon
GTTTTCTCTTACACTGCCAACAAAGAAATTAGAACAGATGACCTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTTACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGAGTATGACCCAGTG
Seq C2 exon
AAATTAACCCTGCAGCATGTGAACAGTAACCAGTGCCTGGATAAAGCCACAGAAGAGGACAGCCAGGTGCCCAGCATCAGAGACTGCACTGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAATGTCACCCTTCCAGAAATATTCTGAGACCAAATTACAACAAAGAAAGGATTGACTGGGCTACCTCAGCATACATTTCTGCCACATTCTTAAGTAGCAAAAAAGGAAAAGTGTTTTCCTCTTCTGTGGGATGTTAAGGTTTATCAGCCATTAAAACTCAGACTCCTCTAGCTTTTCACTTGCTGTGAACCAGCCTTCCTGTCCCAGGACATGAGACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016207-'13-14,'13-12,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATGGTATGGGAGGCAA
R:
TGCTACTTAAGAATGTGGCAGA
Band lengths:
244-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]