GgaEX6020768 @ galGal3
Exon Skipping
Gene
ENSGALG00000013135 | Q5ZJL1_CHICK
Description
NA
Coordinates
chr2:86081816-86086308:-
Coord C1 exon
chr2:86086210-86086308
Coord A exon
chr2:86085290-86085424
Coord C2 exon
chr2:86081816-86083470
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTCATTATTTTTCTGTCTAGGTT
3' ss Score
9.02
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATAAGAAACGTGGAAACAAATCAATGTCTGGATAACATGGCAAGAAAAGAAAATGAAAAAGTTGGGATCTTTAACTGCCACGGAATGGGTGGAAATCAG
Seq A exon
GTTTTCTCATATACAGCCAACAAAGAAATTCGAACAGATGATTTGTGTTTAGATGTCTCCAAACTTAATGGCCCGGTAACAATGCTCAAGTGCCACCATCTAAAAGGAAATCAGCTTTGGGAATATGATCCAGTG
Seq C2 exon
AAATTAACCCTGCTGCATGTGAACAGTAATCAGTGCCTGGACAAAGCCACCGAAGAAGACAGCCAGGTACCCAGCATCAGAGACTGCAACGGCAGCCGCTCTCAGCAGTGGCTACTTCGCAACGTCACCCTTCCAGAAATATTCTGAGAGGTTCTAAAGAAAATAAAGGATTGACTGGGCTACCTCGGCTAATATTTTGGCTACACTGTTAAGTAGCAACAGAAGGAAACTTCTCTGCAGAATCCACAGTTTGCCACCTGTTAGAACTCCTGCAGCTTTTCTGTAGCTGTGAACCAGCCTTCCTGTAAAAGGATGTGAAACTACCACATATACTAGTGAGACTGCGCCCACTGATGTTTACAAGATTGAAAGAGTTTCTTCCAGCAAATCACGTAGAGAACATTTGGACAGTGGAAACATAATCAATGAAATATTCTTTCTGAGGAGCTGCATATCGTCGTAGTTTGCTTGCACATCAGTAACCTCTGCTGAAAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'20-20,'20-18,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCTTTAACTGCCACGG
R:
TGTAGCCAAAATATTAGCCGAGGT
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]