HsaEX6038676 @ hg38
Exon Skipping
Gene
ENSG00000141429 | GALNT1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4123]
Coordinates
chr18:35702805-35710292:+
Coord C1 exon
chr18:35702805-35702995
Coord A exon
chr18:35703509-35703643
Coord C2 exon
chr18:35709624-35710292
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGTGCATTTTTATTTCCAGGTT
3' ss Score
10.22
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTTAGGTTGATATTTAGTGTATATGTGTGTGTATCTGTCTGTCTAATTAACTTCTCCAACTCCTGATATTTTCATTATTTATTGTCCCATAGATACGAAATGTGGAAACGAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAAGTTGGAATTTTTAATTGCCATGGTATGGGGGGTAATCAG
Seq A exon
GTTTTCTCTTATACTGCCAACAAAGAAATTAGAACAGATGACCTTTGCTTGGATGTTTCCAAACTTAATGGCCCAGTTACAATGCTCAAATGCCACCACCTAAAAGGCAACCAACTCTGGGAGTATGACCCAGTG
Seq C2 exon
AAATTAACCCTGCAGCATGTGAACAGTAATCAGTGCCTGGATAAAGCCACAGAAGAGGATAGCCAGGTGCCCAGCATTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTGCCAGAAATATTCTGAGACCAAATTTACAAAAAAACGAAAAAAATAAGGATTGACTGGGCTACCTCAGCATACATTTCTGCCACATTCTTAAGTAGCAAAAAAGGAAAAGTGCTTTCCTCCTCTGCAGGATGTAAGGTTTATCAGCCATTAAAACTTAGACTTCTCTAGCTTTTCACTAGCTGTGAACCAGCCTTCCTGTCCATGGACGTGAAACTGCATAGTAATGAGACTGTGCACACTGATGTTTACAAGATTGAAAGAGTCTTTCTCCGAAAATCATGGTAAAGAATACTGAGACAATGAAAAAAAATCAACAAAATATGCTTTCTGGAGAACTGTACCTTTTATGGTTTGCTTGCACATCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141429-'35-45,'35-38,36-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCATAGATACGAAATGTGGA
R:
TTTCTGGCAGGGTGACGTTTC
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains