GgaEX6020768 @ galGal4
Exon Skipping
Gene
ENSGALG00000013135 | GALNT1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RefSeq peptide;Acc:NP_001006381]
Coordinates
chr2:83818019-83822511:-
Coord C1 exon
chr2:83822413-83822511
Coord A exon
chr2:83821493-83821627
Coord C2 exon
chr2:83818019-83819673
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTCATTATTTTTCTGTCTAGGTT
3' ss Score
9.02
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATAAGAAACGTGGAAACAAATCAATGTCTGGATAACATGGCAAGAAAAGAAAATGAAAAAGTTGGGATCTTTAACTGCCACGGAATGGGTGGAAATCAG
Seq A exon
GTTTTCTCATATACAGCCAACAAAGAAATTCGAACAGATGATTTGTGTTTAGATGTCTCCAAACTTAATGGCCCGGTAACAATGCTCAAGTGCCACCATCTAAAAGGAAATCAGCTTTGGGAATATGATCCAGTG
Seq C2 exon
AAATTAACCCTGCTGCATGTGAACAGTAATCAGTGCCTGGACAAAGCCACCGAAGAAGACAGCCAGGTACCCAGCATCAGAGACTGCAACGGCAGCCGCTCTCAGCAGTGGCTACTTCGCAACGTCACCCTTCCAGAAATATTCTGAGAGGTTCTAAAGAAAATAAAGGATTGACTGGGCTACCTCGGCTAATATTTTGGCTACACTGTTAAGTAGCAACAGAAGGAAACTTCTCTGCAGAATCCACAGTTTGCCACCTGTTAGAACTCCTGCAGCTTTTCTGTAGCTGTGAACCAGCCTTCCTGTAAAAGGATGTGAAACTACCACATATACTAGTGAGACTGCGCCCACTGATGTTTACAAGATTGAAAGAGTTTCTTCCAGCAAATCACGTAGAGAACATTTGGACAGTGGAAACATAATCAATGAAATATTCTTTCTGAGGAGCTGCATATCGTCGTAGTTTGCTTGCACATCAGTAACCTCTGCTGAAAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'39-33,'39-30,40-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCTTTAACTGCCACGG
R:
TGTAGCCAAAATATTAGCCGAGGT
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]