DreEX6041125 @ danRer10
Exon Skipping
Gene
ENSDARG00000061335 | galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2360]
Coordinates
chr16:27215405-27227033:+
Coord C1 exon
chr16:27215405-27215503
Coord A exon
chr16:27215602-27215736
Coord C2 exon
chr16:27224807-27227033
Length
135 bp
Sequences
Splice sites
3' ss Seq
AATCTGTTCCGTTTTCTTAGGTT
3' ss Score
9.4
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATCCGTAATGTGGAGACTAACCAGTGTCTGGATAACATGGCCAGAAAAGAGAATGAGAAAGTGGGCATTTTCAACTGCCATGGCATGGGCGGTAACCAG
Seq A exon
GTTTTCTCATACACAGCCAATAAAGAGATCCGAACTGATGATCTCTGTTTGGATGTTTCCAAACTCAATGGCCCGGTTATGATGCTCAAGTGCCATCATTTGAAAGGCAACCAGCTCTGGGAATATGACCCTGTG
Seq C2 exon
AAGCTGAGTCTGGTACACGTGAACAGTAATCAGTGTTTGGATAAGGCATCTGAAGATGACAGTCAGGTGCCCAGCGTCAGGGACTGCAGCGGGGCCCGTTCACAGCAGTGGCTTCTCCGCAACGTCACACTGCCCGAAATATTCTGAGATCACACACACAGACGGACAGATGGGGAGACTCTCACAGTGTCGCTGATGTAGAGAGCGCGAGAGAAAAAAAACAAAAAACAATACTGCTTTTCCTCTCAATCCCAGTGGTCTGCCTTCAAAACGATCTGAAAAAACAGAACCGCATATGTAAATGAATCTCCCATCACTCCACCTTGCCGAGGACAACGAACGAATGATGGAGAGAGAGACTCGTGGAGAAAGAAACTTGAGTTTGATGCCCTTATCCTGCTCATTCCTGGAGCAAGCGGGCATTTTGGTTATGTTTACGAGAACGCCTCCCTTTTAGAGTATCAGCGTGTGTTAATGTGTGTGTGATGCGAATGCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061335-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=73.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGCATTTTCAACTGCCA
R:
CGCTCTCTACATCAGCGACAC
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]