GgaEX0018938 @ galGal3
Exon Skipping
Gene
ENSGALG00000012536 | GALNT13
Description
NA
Coordinates
chr7:37341911-37352898:+
Coord C1 exon
chr7:37341911-37342009
Coord A exon
chr7:37345437-37345571
Coord C2 exon
chr7:37352758-37352898
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAGGCACTTTCTCTTGGCAGGTG
3' ss Score
8.72
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATCAGGAACGTTGACACCAACCAGTGTTTGGACAACATGGGCCGCAAGGAAAACGAGAAAGTGGGCATCTTCAACTGCCACGGCATGGGAGGGAACCAG
Seq A exon
GTGTTTTCCTACACGGCAGACAAGGAGATCCGCACGGATGATCTGTGCCTGGACGTGTCGCGGCTGAACGGCCCGGTGACCATGCTCAAGTGCCACCACATGCGGGGAAACCAGCTCTGGGAGTACGATGCTGAG
Seq C2 exon
AAGCTCACCCTGAGGCACGTCAACAGCAACCAGTGCCTGGACGGGCCGTCGGAGGAGGACAAGCTGGTCCCCAGCATGAAGGAGTGTGCGGGCGGCCGGTCCCAGCAGTGGCTGCTGCGCAACATGACGCTGGGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012536-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGAACGTTGACACCAAC
R:
CCCCCAGCGTCATGTTGC
Band lengths:
235-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]