MmuEX0020009 @ mm10
Exon Skipping
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:55073898-55118309:+
Coord C1 exon
chr2:55073898-55073996
Coord A exon
chr2:55098563-55098697
Coord C2 exon
chr2:55112821-55118309
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTCAATTTCTATTTCTCAGGTG
3' ss Score
7.61
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATACGAAATGTTGAGACCAATCAATGCTTAGATAACATGGGCCGCAAAGAAAATGAAAAAGTGGGTATCTTCAACTGTCACGGCATGGGAGGTAACCAG
Seq A exon
GTGTTTTCTTATACTGCTGACAAAGAAATCCGAACTGACGACTTGTGCCTGGATGTATCCAGACTCAGTGGCCCTGTAATCATGCTAAAATGCCACCACATGAGAGGAAATCAGCTGTGGGAATATGACGCTGAG
Seq C2 exon
AGACTCACTTTGAGACATGCTAACAGTAACCAATGTCTTGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACCATGCAGGACTGCAGTGGCAGCAGATCCCAACAATGGCTGCTGAGGAACATGACCTTGGGGACATGAAGATATTTTTTTTCCCAAGATGTGAAAGTCTCTACATGTTTGTTTGTCCATTATTTTAGTTTGGTGAAAGTATTAACTTTTCTGAATTAAAAGTTTAAAAAATACTTTTAGTAATATAAAACACAATTGTTTATAATTCATTTTTAGGAATGTTTATTTCCCTACTAAAATTTGTATCTGATTAAAGAAGCACATAAAATATAAATAATAAGAAACTGTTATTAAACATTTGAACTGTTTGGGAAAAACACACCTTGTATTTACTTTTAAAATGTCTTCAATAACCTCTTGTCACAGGGTTATTTGGAATTGGTTTATTTTGTGTTGTAATAATAATTAAAAGAGAGATCATGTAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.356
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=PD(88.1=53.6),PF0065217=Ricin_B_lectin=PU(29.1=49.3)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAGATAACATGGGCCGCA
R:
TGTAGAGACTTTCACATCTTGGGA
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types