RnoEX0037592 @ rn6
Exon Skipping
Gene
ENSRNOG00000005335 | Galnt13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:RGD Symbol;Acc:735044]
Coordinates
chr3:40579347-40624530:+
Coord C1 exon
chr3:40579347-40579445
Coord A exon
chr3:40610793-40610927
Coord C2 exon
chr3:40623975-40624530
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCTCAGTTTTCTCTTTTCAGGTG
3' ss Score
9.84
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATACGAAATGTTGAAACCAATCAATGCCTAGACAACATGGGCCGCAAAGAAAATGAAAAAGTGGGTATCTTCAACTGCCATGGCATGGGAGGTAACCAG
Seq A exon
GTGTTTTCTTACACTGCTGACAAAGAAATCCGAACTGATGACTTGTGCCTGGATGTATCCAGACTCAGTGGGCCTGTAATCATGTTAAAATGCCACCACATGAGAGGGAATCAGCTGTGGGAGTATGATGCTGAG
Seq C2 exon
AGACTCACTTTGAGACATGCTAACAGTAACCAATGTCTTGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACCATGCAAGACTGCAGTGGCAGCAGATCTCAACAATGGCTGCTGAGGAACATGACCTTGGGGACATGAAGATCTTTTTTCCCAAGATGTGAAAGTCTCTACTCATTTGTTTGTCCATTATTTCAGTTTGGTGAAAATCTTAACTTTGCTGAATTAAACGTTTTAAAAATACTTTTAGTAATATAAAACACAGTTGTTTATAATTCATTTTTAGGAATGTTTATTTCCCTACTAAAAATTTGTATCTGATTGAAGAAGCACATAAAATATAAATAATAAGAAACTGTTATTAAACATTTCAATTGTTTGGGAAAAAAAACACCTTGTATTTACTTTTAAAATGTCTTCATTAGCCTCTTGTCACAAGGTTACTTGGTATTGATTTATTTGGTGTTCTAATAACAATTAAAAGAGAGATCATGTAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005335-'16-28,'16-24,17-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0065217=Ricin_B_lectin=FE(26.9=100)
A:
PF0065217=Ricin_B_lectin=FE(37.0=100)
C2:
PF0065217=Ricin_B_lectin=PD(30.3=76.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACAACATGGGCCGCAAAG
R:
TGAGTAGAGACTTTCACATCTTGGG
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]