BtaEX0015357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96184788-96192157:+
Coord C1 exon
chr11:96184788-96184907
Coord A exon
chr11:96188777-96188854
Coord C2 exon
chr11:96192077-96192157
Length
78 bp
Sequences
Splice sites
3' ss Seq
CGTCTGCCCGTGTCTTTCAGGTG
3' ss Score
11.76
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCATAAGTGCAACCTCTGAGGATATTCCCAATAAGATTGAAGATCTGAGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTCACTAGTCCAGACATGGATGAAGTCACCCATG
Seq A exon
GTGCCCACCAGCTGACCTCTCCTCCGTCTCAGTCAGAGTCTCTGCTTGCCATGTTTGATCCATTGTCTTCGCACGAAG
Seq C2 exon
CTCCTATACCATTTAGAAAGAAAGAAAAACAAGAAAAAGACAAAGATGATCTGGGGCCTGACAGATTCTCAACACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544_MULTIEX1-4/16=3-7
Average complexity
C2
Mappability confidence:
93%=100=93%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCTCTGAGGATATTCCCA
R:
TGTCAGGCCCCAGATCATCTT
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development