GgaEX1026083 @ galGal3
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10337188-10338252:+
Coord C1 exon
chr17:10337188-10337307
Coord A exon
chr17:10337687-10337764
Coord C2 exon
chr17:10337879-10338252
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTACCTGTATTTCAGGTG
3' ss Score
10.57
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCATTAGTGCAACATCTGAAGATATTCCCAATAAGATTGAGGATCTCAGGTCTGAATGTAGCTCTGACTTTGGAGGAAAAGATTCTGTGACAAGTCCTGACATGGATGAAGCAGCCCATG
Seq A exon
GTGCCAGTCAGTTGACATCTCCTCCTTCTCAGACAGATTCTTTGCTTGCATTGTTTGACCCTCTGTCATCAAATGAAG
Seq C2 exon
GTGTGTCAGCTGTAGTACGGCCTAAAGTACACTATGCAAGACCATCTCACCCACCACCAGATCCACCAATTTTGGAAGGAGCTGTGGGAGGTAATGAGGCTCGATTACCAAACTTTGGGTCTCACACTTTAATTCCAACTGATTTAGAAGCGTTCAAGCAGAGACACTCTTATCCGGAAAGGCTAGTCCGCAGCAGGAGTTCAGATATAGTATCATCAGTTCGGAGACCTATGAGTGATCCTGGGTGGAACAGACGTCCTGGTAATGAGGAGAGAGAGCTTCCCATGCCAACCACCAACACAGGGACAGCTGTTTTGATGGCTACATCTCAGTCATCATCTTCATCTCCCAGTAAGGACTCCTCCAGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.815 C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGCTCTGACTTTGGAGGA
R:
TCGAGCCTCATTACCTCCCAC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]