GgaEX1026083 @ galGal4
Exon Skipping
Gene
ENSGALG00000000993 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr17:9615193-9616257:+
Coord C1 exon
chr17:9615193-9615312
Coord A exon
chr17:9615692-9615769
Coord C2 exon
chr17:9615884-9616257
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTACCTGTATTTCAGGTG
3' ss Score
10.57
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCATTAGTGCAACATCTGAAGATATTCCCAATAAGATTGAGGATCTCAGGTCTGAATGTAGCTCTGACTTTGGAGGAAAAGATTCTGTGACAAGTCCTGACATGGATGAAGCAGCCCATG
Seq A exon
GTGCCAGTCAGTTGACATCTCCTCCTTCTCAGACAGATTCTTTGCTTGCATTGTTTGACCCTCTGTCATCAAATGAAG
Seq C2 exon
GTGTGTCAGCTGTAGTACGGCCTAAAGTACACTATGCAAGACCATCTCACCCACCACCAGATCCACCAATTTTGGAAGGAGCTGTGGGAGGTAATGAGGCTCGATTACCAAACTTTGGGTCTCACACTTTAATTCCAACTGATTTAGAAGCGTTCAAGCAGAGACACTCTTATCCGGAAAGGCTAGTCCGCAGCAGGAGTTCAGATATAGTATCATCAGTTCGGAGACCTATGAGTGATCCTGGGTGGAACAGACGTCCTGGTAATGAGGAGAGAGAGCTTCCCATGCCAACCACCAACACAGGGACAGCTGTTTTGATGGCTACATCTCAGTCATCATCTTCATCTCCCAGTAAGGACTCCTCCAGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-'18-23,'18-21,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.815 C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGCTCTGACTTTGGAGGA
R:
TCGAGCCTCATTACCTCCCAC
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]