DreEX0034288 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34441587-34446681:-
Coord C1 exon
chr8:34446559-34446681
Coord A exon
chr8:34444636-34444713
Coord C2 exon
chr8:34441587-34441933
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCATTCTTCCACCTCTCTAGGAG
3' ss Score
9.94
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CAGGCATCAGTGCCACGTCGGAGGACATCCCTAATAAGATTGAAGACCTACGCTCGGAATGCAGCTCCGATTTTGGAGGCAAAGACTCCGTGACCAGTCCAGATGGAGAGGACTCTGCTCATG
Seq A exon
GAGCTCACAGTCTCTCCTGTGCACCTTCTCAAACAGATTCACTGCTGGCCATGTTCGATCCCCTCTCCTCTGGAGAAG
Seq C2 exon
GTTCGTGCACTGGCACCATAGTGCGACCCAAGGTACACTATCCTCGTCCTCCTCACCCTCCGCCTGACCCACCCATTCCAGAGGCCAGCATAACCAGCCACATGGAACCCCGTCCGCCCCTCTTTCCTCCCCACCTGGCACAGGGTGACCTGGAGCACCCCAAGCAGAGGCACTCTTACCCTGAGAGGCTGGTGAGGAGCCGCAGCACAGATGTGGTGTCCGCTGGACGCAGACCTAACAGTGACCCCGGACTGAACCGCAGAACCATGATGGAGGAGAGAGACCCGGCTGGAGCTTACTCTACTGGGCCCACCTCCTCTCCCAGCAAGGATTCCCTCAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCTACGCTCGGAATGC
R:
TGGTTATGCTGGCCTCTGGAA
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]