RnoEX6016531 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13775819-13777751:-
Coord C1 exon
chr3:13777632-13777751
Coord A exon
chr3:13776272-13776349
Coord C2 exon
chr3:13775819-13776183
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGTGTGCCTTGTTGTTGTAGGCG
3' ss Score
7.84
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCATAAGCGCTACATCGGAGGATATTCCCAATAAGATCGAAGACCTGCGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTAACTAGTCCAGATGTGGATGACATAGCCCATG
Seq A exon
GCGCCCACCAGCTGACCTCTCCTCCCTCTCAGTCAGAGTCTCTGCTTGCCATGTTTGACCCACTGTCTTCACATGAAG
Seq C2 exon
GGGCCTCTGCTGTGGTAAGGCCGAAGGTTCACTATGCCCGGCCCTCGCATCCACCTCCAGATCCTCCAATCCTGGAAGGTGCAGTGGGAGGAAATGAAGCCAGGCTGCCCAACTTCGGTTCTCACGTTTTAACTGCAGCTGAAATGGAGGCGTTCAGGCAGAGGCACTCTTACCCTGAGAGACTAGTGCGCAGCAGAAGCTCTGATATAGTGTCTTGTGTGCGGCGGCCCATGAGTGACCCCAGCTGGAACCGACGTCCAGGGAATGAAGAACTTCCACCAGCTGCAGCCACTGGTGCTACTTCTTTGGTGGCTGCACCTCACTCGTCATCTTCGTCCCCGAGTAAGGACTCTTCAAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-'29-24,'29-22,30-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.926 C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCTCTGATTTTGGGG
R:
CCTGGCTTCATTTCCTCCCAC
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]