BtaEX0015360 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96190999-96195625:+
Coord C1 exon
chr11:96190999-96191086
Coord A exon
chr11:96192077-96192157
Coord C2 exon
chr11:96195503-96195625
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGACTTTATTTAATTTCCAGCTC
3' ss Score
8.17
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACTGAAGAACGCAAAGATAGCGATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAGAAAACGTTTTGTTTCTGCCATGCCCAAAG
Seq A exon
CTCCTATACCATTTAGAAAGAAAGAAAAACAAGAAAAAGACAAAGATGATCTGGGGCCTGACAGATTCTCAACACTCACAG
Seq C2 exon
ATGATCCCAGCCCGAGACTCAGTGCACAGGCTCAGGTCGCTGAGGATATTCTGGACAAATACAGGAATGCCATCAAACGCACCAGCCCCAGTGAGGGAGCTCTGGCAAACTACGAAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544_MULTIEX1-7/16=6-8
Average complexity
S
Mappability confidence:
92%=100=92%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=1.000 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015341fB2929
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAACAGACCTTGGTGGA
R:
TTCGTAGTTTGCCAGAGCTCC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development